../../tmp/servers/virsirnadb/440957218
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1801 | 1 | acagcctgtgggttgatcc | 19 | |
| M33854.1 | CXA3CG Coxsackievirus B3 (CVB3) complete genome | 6 | ................... | 24 | 100 |
| M16572.1 | CXA3G Coxsackievirus B3, complete genome | 6 | ................... | 24 | 100 |
| M88483.1 | CXAB3CG Coxsackievirus B3 mRNA, complete genome | 6 | ................... | 24 | 100 |
| U57056.1 | CXU57056 Coxsackievirus B3 Woodruff variant, complete genome | 6 | ................... | 24 | 100 |
| AF162711.1 | Echovirus 30 strain Bastianni, complete genome | 6 | ................... | 24 | 100 |
| AF081485.1 | Coxsackievirus B2 strain Ohio, complete genome | 6 | ................... | 24 | 100 |
| AF081485.1 | Coxsackievirus B2 strain Ohio, complete genome | 6962 | .a..a..a.........__ | 6978 | 73 |
| AF230973.1 | AF230973 Enterovirus Yanbian 96-83csf, complete genome | 7 | ................... | 25 | 100 |
| AF231763.1 | Coxsackievirus B3 strain 31-1-93, complete genome | 6 | ................... | 24 | 100 |
| AF231764.1 | Coxsackievirus B3 strain P, complete genome | 6 | ................... | 24 | 100 |
| AF231765.1 | Coxsackievirus B3 strain PD, complete genome | 6 | ................... | 24 | 100 |
| AF465516.1 | Human echovirus 7 strain Wallace, complete genome | 6 | ................... | 24 | 100 |
| AF465518.1 | Human echovirus 2 strain Cornelis, complete genome | 6 | ................... | 24 | 100 |
| AY302545.1 | Human echovirus 2 strain Cornelis complete genome | 6 | ................... | 24 | 100 |
| AY302552.1 | Human echovirus 29 strain JV-10 complete genome | 6 | ................... | 24 | 100 |
| AY302556.1 | Human echovirus 33 strain Toluca-3 complete genome | 6 | ................... | 24 | 100 |
| AY673831.1 | Human coxsackievirus B3 strain GA, complete genome | 6 | ................... | 24 | 100 |
| AY752945.1 | Human coxsackievirus B3 strain 0, complete genome | 6 | ................... | 24 | 100 |
| AY752946.1 | Human coxsackievirus B3 strain 20, complete genome | 6 | ................... | 24 | 100 |
| AY843298.1 | Human enterovirus 80 strain USA/CA67-10387, complete genome | 6 | ................... | 24 | 100 |
| AY843306.1 | Human enterovirus 88 strain BAN01-10398, complete genome | 6 | ................... | 24 | 100 |
| AY843306.1 | Human enterovirus 88 strain BAN01-10398, complete genome | 1112 | _______..........._ | 1102 | 57 |
| EU144042.1 | Human coxsackievirus B3 isolate CVB3-MCH polyprotein gene, complete c | 6 | ................... | 24 | 100 |
| FJ000001.1 | Human coxsackievirus B3 strain Fuyang19, complete genome | 6 | ................... | 24 | 100 |
| GQ141875.1 | Human coxsackievirus B3 strain Beijing0811, complete genome | 6 | ................... | 24 | 100 |
| AY752944.2 | Human coxsackievirus B3 strain 28, complete genome | 6 | ................... | 24 | 100 |
| AF465513.1 | Human coxsackievirus A18 strain G-13, complete genome | 6 | ...............t... | 24 | 94 |
| AF465513.1 | Human coxsackievirus A18 strain G-13, complete genome | 1114 | _____.g..........._ | 1102 | 63 |
| AF465515.1 | Human coxsackievirus A21 strain Kuykendall, complete genome | 6 | ...............t... | 24 | 94 |
| X54521.1 | Swine vesicular disease virus complete genomic RNA | 6 | ...............t... | 24 | 94 |
| X54521.1 | Swine vesicular disease virus complete genomic RNA | 1110 | _______............ | 1099 | 63 |
| D00627.1 | CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G | 7 | ...............t... | 25 | 94 |
| D00627.1 | CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G | 1112 | ______............. | 1100 | 68 |
| D16364.1 | SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd | 6 | ...............t... | 24 | 94 |
| D16364.1 | SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd | 1111 | _______............ | 1100 | 63 |
| X92886.1 | Echovirus 9 (strain Barty), complete genome | 6 | ...............t... | 24 | 94 |
| X92886.1 | Echovirus 9 (strain Barty), complete genome | 7011 | ___.a..a.........._ | 7025 | 68 |
| X92886.1 | Echovirus 9 (strain Barty), complete genome | 1109 | ______...t......... | 1097 | 63 |
| D00435.1 | SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl | 6 | ...............t... | 24 | 94 |
| D00435.1 | SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl | 1111 | _______............ | 1100 | 63 |
| AF085363.1 | Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds | 6 | ...............t... | 24 | 94 |
| AF085363.1 | Coxsackievirus B2 strain Ohio-1 polyprotein gene, complete cds | 6962 | .a..a..a.........__ | 6978 | 73 |
| AF114383.1 | Coxsackievirus B5 strain Faulkner, complete genome | 6 | ...............t... | 24 | 94 |
| AF114383.1 | Coxsackievirus B5 strain Faulkner, complete genome | 1110 | _______..........._ | 1100 | 57 |
| AF029859.2 | Echovirus 1 (strain Farouk / ATCC VR-1038) polyprotein precursor, gen | 6 | ...............t... | 24 | 94 |
| AF241359.1 | Enterovirus CA55-1988, complete genome | 7 | ...............t... | 25 | 94 |
| AF241359.1 | Enterovirus CA55-1988, complete genome | 1113 | ______.........g... | 1101 | 63 |
| AY036578.1 | Human echovirus 7 strain UMMC polyprotein gene, complete cds | 6 | ...............t... | 24 | 94 |
| AY036579.1 | Human echovirus 7 strain Wallace polyprotein gene, complete cds | 6 | ...............t... | 24 | 94 |
| AF524866.1 | Human echovirus 9 strain Barty, complete genome | 6 | ...............t... | 24 | 94 |
| AF524866.1 | Human echovirus 9 strain Barty, complete genome | 7013 | ___.a..a.........._ | 7027 | 68 |
| AF524866.1 | Human echovirus 9 strain Barty, complete genome | 1111 | ______...a......... | 1099 | 63 |
| AF524867.1 | Human echovirus 9 isolate DM, complete genome | 6 | ...............t... | 24 | 94 |
| AY302540.1 | Human echovirus 14 strain Tow complete genome | 6 | ...............t... | 24 | 94 |
| AY302542.1 | Human echovirus 16 strain Harrington complete genome | 6 | ...............t... | 24 | 94 |
| AY302543.1 | Human echovirus 17 strain CHHE-29 complete genome | 6 | ...............t... | 24 | 94 |
| AY302543.1 | Human echovirus 17 strain CHHE-29 complete genome | 1112 | ______.........g... | 1100 | 63 |
| AY302546.1 | Human echovirus 20 strain JV-1 complete genome | 6 | ...............t... | 24 | 94 |
| AY302547.1 | Human echovirus 21 strain Farina complete genome | 6 | ...............t... | 24 | 94 |
| AY302550.1 | Human echovirus 26 strain Coronel complete genome | 6 | ...............t... | 24 | 94 |
| AY302550.1 | Human echovirus 26 strain Coronel complete genome | 4580 | .........t.c...____ | 4566 | 68 |
| AY302554.1 | Human echovirus 31 strain Caldwell complete genome | 6 | ...............t... | 24 | 94 |
| AY429470.1 | Swine vesicular disease virus strain HK'70, complete genome | 6 | ...............t... | 24 | 94 |
| AY429470.1 | Swine vesicular disease virus strain HK'70, complete genome | 1111 | _______............ | 1100 | 63 |
| AY556057.1 | Enterovirus 74 strain USA/CA75-10213, complete genome | 6 | ...............t... | 24 | 94 |
| AY556057.1 | Enterovirus 74 strain USA/CA75-10213, complete genome | 1111 | ______............_ | 1100 | 63 |
| AJ577589.1 | Human echovirus 11, isolate HUN-1108, complete virion genome | 6 | ...............t... | 24 | 94 |
| AJ577590.1 | Human echovirus 11, isolate FIN-0666, complete virion genome | 6 | ...............c... | 24 | 94 |
| AJ577594.1 | Human echovirus 11, isolate ROU-9191, complete virion genome | 6 | ...............t... | 24 | 94 |
| AY875692.1 | Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome | 6 | ...............t... | 24 | 94 |
| AY843301.1 | Human enterovirus 83 strain USA/CA76-10392, complete genome | 7 | ...............t... | 25 | 94 |
| AY843303.1 | Human enterovirus 85 strain BAN00-10353, complete genome | 6 | ...............t... | 24 | 94 |
| AY843305.1 | Human enterovirus 87 strain BAN01-10396, complete genome | 6 | ...............t... | 24 | 94 |
| AY843307.1 | Human enterovirus 97 strain BAN99-10355, complete genome | 6 | ...............t... | 24 | 94 |
| AY843308.1 | Human enterovirus 101 strain CIV03-10361, complete genome | 6 | ...............t... | 24 | 94 |
| AY843308.1 | Human enterovirus 101 strain CIV03-10361, complete genome | 397 | ____...........cc.. | 383 | 68 |
| DQ246620.1 | Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome | 6 | ................a.. | 24 | 94 |
| DQ534205.1 | Human echovirus 30 isolate 14916net87, complete genome | 6 | ...............t... | 24 | 94 |
| DQ534205.1 | Human echovirus 30 isolate 14916net87, complete genome | 1113 | ______...c......... | 1101 | 63 |
| DQ902712.1 | Human enterovirus 84 isolate CIV2003-10603, complete genome | 6 | ...............t... | 24 | 94 |
| EF174468.1 | Human coxsackievirus B2 isolate KOR 04-243, complete genome | 6 | ...............t... | 24 | 94 |
| EF174469.1 | Human coxsackievirus B2 isolate KOR 04-279, complete genome | 6 | ...............t... | 24 | 94 |
| EF634316.1 | Human echovirus 11 strain D207, complete genome | 7 | ...............t... | 25 | 94 |
| EU147493.1 | Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds | 6 | ...............t... | 24 | 94 |
| EU887278.1 | Swine vesicular disease virus SVDV01, complete genome | 6 | ...............t... | 24 | 94 |
| EU887278.1 | Swine vesicular disease virus SVDV01, complete genome | 1111 | _______............ | 1100 | 63 |
| EU887279.1 | Swine vesicular disease virus SVDV02, complete genome | 6 | ...............t... | 24 | 94 |
| EU887279.1 | Swine vesicular disease virus SVDV02, complete genome | 1111 | _______............ | 1100 | 63 |
| EU887280.1 | Swine vesicular disease virus SVDV03, complete genome | 6 | ...............t... | 24 | 94 |
| EU887280.1 | Swine vesicular disease virus SVDV03, complete genome | 1111 | _______............ | 1100 | 63 |
| EU887281.1 | Swine vesicular disease virus SVDV04, complete genome | 6 | ...............t... | 24 | 94 |
| EU887281.1 | Swine vesicular disease virus SVDV04, complete genome | 1111 | _______............ | 1100 | 63 |
| EU887282.1 | Swine vesicular disease virus SVDV, complete genome | 6 | ...............t... | 24 | 94 |
| EU887282.1 | Swine vesicular disease virus SVDV, complete genome | 1111 | _______............ | 1100 | 63 |
| AB426611.1 | Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227 | 6 | ...............t... | 24 | 94 |
| FJ172447.1 | Human echovirus 4 strain AUS250G, complete genome | 6 | ...............c... | 24 | 94 |
| GU109481.1 | Human coxsackievirus B3 strain SSM-CVB3, complete genome | 6 | ...............c... | 24 | 94 |
| GU109481.1 | Human coxsackievirus B3 strain SSM-CVB3, complete genome | 1111 | ______...c......... | 1099 | 63 |
| AB501329.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2 | 6 | ...............t... | 24 | 94 |
| AB501330.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2 | 6 | ...............t... | 24 | 94 |
| AB501331.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)- | 6 | ...............t... | 24 | 94 |
| AB501332.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)- | 6 | ...............t... | 24 | 94 |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 6 | ...............t... | 24 | 94 |
| AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 7 | ...............c... | 25 | 94 |
| AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 6031 | ______.........g... | 6019 | 63 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 6 | ...............t... | 24 | 94 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 6 | ...............t... | 24 | 94 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 6 | ...............t... | 24 | 94 |
| AB482183.1 | Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya | 6 | ...............t... | 24 | 94 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 6 | ...............t... | 24 | 94 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 6 | ...............t... | 24 | 94 |
| HQ189392.1 | Human enterovirus 71 isolate HUN/1978, complete genome | 6 | ...............t... | 24 | 94 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 6 | ...............t... | 24 | 94 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 6 | ...............t... | 24 | 94 |
| AF465514.1 | Human coxsackievirus A20 strain IH Pool 35, complete genome | 6 | ...............ta.. | 24 | 89 |
| X67706.1 | Coxsackievirus B5 complete genome | 6 | ...............ta.. | 24 | 89 |
| X67706.1 | Coxsackievirus B5 complete genome | 6960 | ___.a..a.........._ | 6974 | 68 |
| X05690.1 | Coxsackievirus B4 complete genome | 6 | ...............ta.. | 24 | 89 |
| X80059.1 | Echo Virus 11 genomic DNA | 6 | ...............ta.. | 24 | 89 |
| X84981.1 | Echovirus 9 (strain Hill), complete genome | 6 | ...............ta.. | 24 | 89 |
| U16283.1 | E6U16283 Echovirus 6 lytic strain, complete genome | 6 | ...............cc.. | 24 | 89 |
| U16283.1 | E6U16283 Echovirus 6 lytic strain, complete genome | 1109 | _______..........._ | 1099 | 57 |
| S76772.1 | polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive | 6 | ...............ta.. | 24 | 89 |
| S76772.1 | polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive | 399 | ____...........cc.. | 385 | 68 |
| X79047.1 | Echovirus type 12, prototype Travis wild type genome | 6 | ...............tc.. | 24 | 89 |
| X77708.1 | Echovirus type 12, prototype Travis complete RNA genome | 6 | ...............tc.. | 24 | 89 |
| AF039205.1 | Coxsackievirus B6 strain Schmitt, complete genome | 6 | ...............ta.. | 24 | 89 |
| AF083069.1 | Echovirus 5, complete genome | 6 | ...............ca.. | 24 | 89 |
| AF105342.1 | Coxsackievirus B6 strain Schmitt, complete genome | 6 | ...............ta.. | 24 | 89 |
| AF114384.1 | Coxsackievirus B6 strain Schmitt, complete genome | 6 | ...............ta.. | 24 | 89 |
| AF268065.1 | Swine vesicular disease virus strain NET/1/92, complete genome | 6 | .....t.........t... | 24 | 89 |
| AF268065.1 | Swine vesicular disease virus strain NET/1/92, complete genome | 1111 | _______............ | 1100 | 63 |
| AF311938.1 | Human echovirus 30 strain Bastianni, complete genome | 6 | ...............ta.. | 24 | 89 |
| AF311939.1 | Human coxsackievirus B4 strain E2 variant, complete genome | 6 | ...............ta.. | 24 | 89 |
| AF311939.1 | Human coxsackievirus B4 strain E2 variant, complete genome | 399 | ____...........cc.. | 385 | 68 |
| AF317694.1 | Human echovirus 18 strain Metcalf polyprotein gene, complete cds | 6 | ...............ta.. | 24 | 89 |
| AF328683.1 | Human coxsackievirus B4 polyprotein-like gene, complete sequence | 6 | ...............ta.. | 24 | 89 |
| AF328683.1 | Human coxsackievirus B4 polyprotein-like gene, complete sequence | 1113 | _______..........._ | 1103 | 57 |
| AJ493062.2 | Human enterovirus 77 gene for polyprotein, genomic RNA, isolate CF496 | 6 | ...............ta.. | 24 | 89 |
| AF465517.1 | Human echovirus 6 strain Charles, complete genome | 6 | ...............cc.. | 24 | 89 |
| AF465517.1 | Human echovirus 6 strain Charles, complete genome | 1110 | _______..........._ | 1100 | 57 |
| AY302539.1 | Human echovirus 13 strain Del Carmen complete genome | 6 | ...............ta.. | 24 | 89 |
| AY302539.1 | Human echovirus 13 strain Del Carmen complete genome | 4566 | .........t.c...____ | 4552 | 68 |
| AY302539.1 | Human echovirus 13 strain Del Carmen complete genome | 1111 | ______...t......... | 1099 | 63 |
| AY302541.1 | Human echovirus 15 strain CH 96-51 complete genome | 6 | ...............ta.. | 24 | 89 |
| AY302544.1 | Human echovirus 19 strain Burke complete genome | 6 | ...............ta.. | 24 | 89 |
| AY302544.1 | Human echovirus 19 strain Burke complete genome | 1111 | ______............. | 1099 | 68 |
| AY302544.1 | Human echovirus 19 strain Burke complete genome | 397 | ____...........cc.. | 383 | 68 |
| AY302548.1 | Human echovirus 24 strain DeCamp complete genome | 6 | ...............ca.. | 24 | 89 |
| AY302549.1 | Human echovirus 25 strain JV-4 complete genome | 6 | ...............ta.. | 24 | 89 |
| AY302549.1 | Human echovirus 25 strain JV-4 complete genome | 1109 | _______..........._ | 1099 | 57 |
| AY302551.1 | Human echovirus 27 strain Bacon complete genome | 6 | ...............ta.. | 24 | 89 |
| AY302551.1 | Human echovirus 27 strain Bacon complete genome | 399 | ____...........cc.. | 385 | 68 |
| AY302553.1 | Human echovirus 3 strain Morrisey complete genome | 6 | ...............ta.. | 24 | 89 |
| AY302557.1 | Human echovirus 4 strain Pesacek complete genome | 6 | ...............ca.. | 24 | 89 |
| AY302557.1 | Human echovirus 4 strain Pesacek complete genome | 6953 | ___.a..a.........._ | 6967 | 68 |
| AY302557.1 | Human echovirus 4 strain Pesacek complete genome | 1110 | _______..........._ | 1100 | 57 |
| AY302558.1 | Human echovirus 6 strain D'Amori complete genome | 6 | ...............cc.. | 24 | 89 |
| AY302558.1 | Human echovirus 6 strain D'Amori complete genome | 1110 | _______..........._ | 1100 | 57 |
| AY302559.1 | Human echovirus 7 strain Wallace complete genome | 6 | ...............ta.. | 24 | 89 |
| AY302560.1 | Enterovirus 69 strain Toluca-1 complete genome | 6 | ...............ta.. | 24 | 89 |
| AY843297.1 | Human enterovirus 79 strain USA/CA79-10384, complete genome | 6 | ...............ta.. | 24 | 89 |
| AY843297.1 | Human enterovirus 79 strain USA/CA79-10384, complete genome | 399 | ____...........cc.. | 385 | 68 |
| AY843297.1 | Human enterovirus 79 strain USA/CA79-10384, complete genome | 4587 | .........t.t...____ | 4573 | 68 |
| AY843297.1 | Human enterovirus 79 strain USA/CA79-10384, complete genome | 1114 | ______.........g... | 1102 | 63 |
| AY843299.1 | Human enterovirus 81 strain USA/CA68-10389, complete genome | 6 | ...............ta.. | 24 | 89 |
| AY843299.1 | Human enterovirus 81 strain USA/CA68-10389, complete genome | 4572 | .........t.t...____ | 4558 | 68 |
| AY843300.1 | Human enterovirus 82 strain USA/CA64-10390, complete genome | 6 | ...............ca.. | 24 | 89 |
| AY843304.1 | Human enterovirus 86 strain BAN00-10354, complete genome | 6 | ...............ta.. | 24 | 89 |
| AY843304.1 | Human enterovirus 86 strain BAN00-10354, complete genome | 1111 | ______............_ | 1100 | 63 |
| AJ849942.1 | Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/ | 6 | ...............ta.. | 24 | 89 |
| DQ480420.1 | Human coxsackievirus B4 strain Tuscany, complete genome | 6 | ...............ta.. | 24 | 89 |
| EF371880.2 | Human enterovirus B isolate SE-03-78616, complete genome | 6 | ...............ta.. | 24 | 89 |
| AB426610.1 | Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 | 6 | ...............ta.. | 24 | 89 |
| AB426610.1 | Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 | 1110 | ______............. | 1098 | 68 |
| FJ357838.1 | Human coxsackievirus B3 strain GZ803, complete genome | 6 | ....t..........t... | 24 | 89 |
| FJ357838.1 | Human coxsackievirus B3 strain GZ803, complete genome | 1113 | ______...c......... | 1101 | 63 |
| HM775882.1 | Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome | 6 | ...............ta.. | 24 | 89 |
| HM777023.1 | Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome | 6 | ...............tc.. | 24 | 89 |
| HM777023.1 | Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome | 6969 | .a..a..a.........._ | 6986 | 78 |
| AF136379.1 | Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds | 6 | ...............ca.. | 24 | 89 |
| AF176044.1 | Enterovirus 71 polyprotein gene, complete cds | 7 | ...............ca.. | 25 | 89 |
| AF304457.1 | Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds | 6 | ...............ca.. | 24 | 89 |
| AF304458.1 | Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds | 6 | ...............ca.. | 24 | 89 |
| AF304459.1 | Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds | 6 | ...............ca.. | 24 | 89 |
| AY421760.1 | Human coxsackievirus A2 strain Fleetwood, complete genome | 6 | ...............ca.. | 24 | 89 |
| AY421761.1 | Human coxsackievirus A3 strain Olson, complete genome | 6 | ...............ta.. | 24 | 89 |
| AY421763.1 | Human coxsackievirus A5 strain Swartz, complete genome | 6 | ...............ca.. | 24 | 89 |
| AY421764.1 | Human coxsackievirus A6 strain Gdula, complete genome | 6 | ...............ca.. | 24 | 89 |
| AY421765.1 | Human coxsackievirus A7 strain Parker, complete genome | 7 | ...............tc.. | 25 | 89 |
| AY421766.1 | Human coxsackievirus A8 strain Donovan, complete genome | 6 | ...............ca.. | 24 | 89 |
| AY421767.1 | Human coxsackievirus A10 strain Kowalik, complete genome | 6 | ...............ca.. | 24 | 89 |
| AY421768.1 | Human coxsackievirus A12 strain Texas-12, complete genome | 6 | ...............ta.. | 24 | 89 |
| AY421769.1 | Human coxsackievirus A14 strain G-14, complete genome | 6 | ...............ta.. | 24 | 89 |
| AY697458.1 | Human enterovirus 76 polyprotein gene, complete cds | 7 | ...............ta.. | 25 | 89 |
| AB204852.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR | 6 | ...............ca.. | 24 | 89 |
| AB204853.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts | 6 | ...............ca.. | 24 | 89 |
| DQ060149.1 | Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ341354.1 | Human enterovirus 71 isolate 3799-SIN-98, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ341355.1 | Human enterovirus 71 isolate 06-KOR-00, complete genome | 6 | ...............ta.. | 24 | 89 |
| DQ341356.1 | Human enterovirus 71 isolate 03-KOR-00, complete genome | 6 | ...............tg.. | 24 | 89 |
| DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ341358.1 | Human enterovirus 71 isolate S40221-SAR-00, complete genome | 6 | ...............ta.. | 24 | 89 |
| DQ341359.1 | Human enterovirus 71 isolate S10862-SAR-98, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ341360.1 | Human enterovirus 71 isolate J115-MAL-01, complete genome | 6 | ...............ta.. | 24 | 89 |
| DQ341361.1 | Human enterovirus 71 isolate 1M-AUS-12-00, complete genome | 6 | ...............ta.. | 24 | 89 |
| DQ341362.1 | Human enterovirus 71 isolate SB12736-SAR-03, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ341363.1 | Human enterovirus 71 isolate S19841-SAR-03, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ341364.1 | Human enterovirus 71 isolate 5511-SIN-00, complete genome | 6 | ...............ta.. | 24 | 89 |
| DQ341365.1 | Human enterovirus 71 isolate PP37-MAL-01, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ341366.1 | Human enterovirus 71 isolate SB2864-SAR-00, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ341367.1 | Human enterovirus 71 isolate MY821-3-SAR-97, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ341368.1 | Human enterovirus 71 isolate MY104-9-SAR-97, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 6 | ...............ca.. | 24 | 89 |
| DQ452074.1 | Human enterovirus 71 strain 804/NO/03, complete genome | 6 | ...............ca.. | 24 | 89 |
| EF063152.1 | Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd | 6 | ...............ta.. | 24 | 89 |
| EF373575.1 | Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet | 7 | ...............ca.. | 25 | 89 |
| EF373576.1 | Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet | 6 | ...............ca.. | 24 | 89 |
| EF667343.1 | Simian enterovirus 46 strain RNM5, complete genome | 7 | ...............ta.. | 25 | 89 |
| EF667344.1 | Human enterovirus 92 strain RJG7, complete genome | 7 | ...............ta.. | 25 | 89 |
| EU131776.1 | Human enterovirus 71 strain N3340-TW-02, complete genome | 6 | ...............ca.. | 24 | 89 |
| AF326764.2 | Simian enterovirus 46 strain OM22 (P15), complete genome | 6 | ...............ta.. | 24 | 89 |
| EU364841.1 | Human enterovirus 71 strain 26M/AUS/4/99, complete genome | 6 | ...............ca.. | 24 | 89 |
| EU376004.1 | Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome | 6 | ...............ca.. | 24 | 89 |
| EU376005.1 | Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome | 6 | ...............ca.. | 24 | 89 |
| EU703812.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete | 6 | ...............ca.. | 24 | 89 |
| EU703813.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete | 6 | ...............ca.. | 24 | 89 |
| EU703814.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete | 6 | ...............ca.. | 24 | 89 |
| EU812515.1 | Human enterovirus 71 strain FY23 from China, complete genome | 6 | ...............ca.. | 24 | 89 |
| EU864507.1 | Human enterovirus 71 isolate EV71/Zhejiang08, complete genome | 7 | ...............ca.. | 25 | 89 |
| FJ158600.1 | Human enterovirus 71 isolate DTID/ZJU-62, complete genome | 6 | ...............ca.. | 24 | 89 |
| FJ158601.1 | Human enterovirus 71 isolate DTID/ZJU-74, complete genome | 6 | ...............ca.. | 24 | 89 |
| FJ194964.1 | Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome | 6 | ...............ca.. | 24 | 89 |
| FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 6 | ...............ca.. | 24 | 89 |
| AB469182.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E | 6 | ...............ca.. | 24 | 89 |
| AB469183.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71 | 6 | ...............ca.. | 24 | 89 |
| FJ439769.1 | Human enterovirus 71 strain Fuyang-0805, complete genome | 6 | ...............ca.. | 24 | 89 |
| FJ606447.1 | Human enterovirus 71 strain BJ08-Z004-3, complete genome | 6 | ...............ca.. | 24 | 89 |
| FJ606448.1 | Human enterovirus 71 strain BJ08-Z011-4, complete genome | 6 | ...............ca.. | 24 | 89 |
| FJ606449.1 | Human enterovirus 71 strain BJ08-Z020-1, complete genome | 6 | ...............ca.. | 24 | 89 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 6 | ...............ca.. | 24 | 89 |
| FJ713137.1 | Human enterovirus 71 strain Shanghai 036-2009, complete genome | 7 | ...............ca.. | 25 | 89 |
| GQ892830.1 | Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome | 6 | ...............ta.. | 24 | 89 |
| GQ994989.1 | Human enterovirus 71 strain Chongqing1-09-China, complete genome | 6 | ...............ca.. | 24 | 89 |
| GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 6 | ...............ca.. | 24 | 89 |
| GQ994991.1 | Human enterovirus 71 strain Chongqing3-09-China, complete genome | 6 | ...............ca.. | 24 | 89 |
| GU366191.1 | Human enterovirus 71 strain Henan10-08-China, complete genome | 6 | ...............ca.. | 24 | 89 |
| GU396280.1 | Human enterovirus 71 isolate EV71/Lanzhou01, complete genome | 6 | ...............ca.. | 24 | 89 |
| GU459070.1 | Human enterovirus 71 isolate FY23-K12, complete genome | 6 | ...............ca.. | 24 | 89 |
| GU434678.1 | Human enterovirus 71 strain EV71-Hubei-09-China, complete genome | 6 | ...............ca.. | 24 | 89 |
| HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 6 | ...............ca.. | 24 | 89 |
| GQ279369.1 | Human enterovirus 71 strain SZ/HK08-5, complete genome | 6 | ...............ca.. | 24 | 89 |
| GQ279370.1 | Human enterovirus 71 strain SZ/HK08-6, complete genome | 6 | ...............ca.. | 24 | 89 |
| HM002484.1 | Human enterovirus 71 strain BJ67, complete genome | 6 | ...............ca.. | 24 | 89 |
| HM002485.1 | Human enterovirus 71 strain BJ97, complete genome | 6 | ...............ca.. | 24 | 89 |
| HM002486.1 | Human enterovirus 71 strain BJ110, complete genome | 6 | ...............ca.. | 24 | 89 |
| HM002487.1 | Human enterovirus 71 strain BJ303, complete genome | 6 | ...............ca.. | 24 | 89 |
| HM002488.1 | Human enterovirus 71 strain BJ366, complete genome | 6 | ...............ca.. | 24 | 89 |
| HM002489.1 | Human enterovirus 71 strain BJ398, complete genome | 6 | ...............ca.. | 24 | 89 |
| HM053669.1 | Human enterovirus 71 strain BJ293, complete genome | 6 | ...............ca.. | 24 | 89 |
| HM053670.1 | Human enterovirus 71 strain BJ393, complete genome | 6 | ...............ca.. | 24 | 89 |
| HM053671.1 | Human enterovirus 71 strain BJ462, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ407557.1 | Human enterovirus 71 strain LN009, complete genome | 6 | ...............ca.. | 24 | 89 |
| AB550332.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org | 6 | ...............ca.. | 24 | 89 |
| AB550333.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 | 6 | ...............ca.. | 24 | 89 |
| AB550334.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o | 6 | ...............ca.. | 24 | 89 |
| AB550335.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L | 6 | ...............ca.. | 24 | 89 |
| AB550336.1 | Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-o | 6 | ...............ca.. | 24 | 89 |
| AB550337.1 | Human enterovirus 71 genomic RNA, complete genome, strain: C7/Osaka-L | 6 | ...............ca.. | 24 | 89 |
| AB550338.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 6 | ...............ca.. | 24 | 89 |
| AB550339.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 6 | ...............ca.. | 24 | 89 |
| AB550340.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org | 6 | ...............ta.. | 24 | 89 |
| AB550341.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS | 6 | ...............ta.. | 24 | 89 |
| HQ188292.1 | Human enterovirus 71 strain Fuyang-0805a, complete genome | 9 | ...............ca.. | 27 | 89 |
| HQ891923.1 | Human enterovirus 71 strain Shanghai 27-2009, complete genome | 7 | ...............ca.. | 25 | 89 |
| HQ891924.1 | Human enterovirus 71 strain Shanghai 28-2009, complete genome | 7 | ...............ca.. | 25 | 89 |
| HQ891925.1 | Human enterovirus 71 strain Shanghai 36-2009, complete genome | 7 | ...............ca.. | 25 | 89 |
| HQ891926.1 | Human enterovirus 71 strain Shanghai 51-2009, complete genome | 7 | ...............ca.. | 25 | 89 |
| HQ891927.1 | Human enterovirus 71 strain Shanghai 64-2009, complete genome | 7 | ...............ca.. | 25 | 89 |
| HQ891928.1 | Human enterovirus 71 strain Shanghai 117-2009, complete genome | 7 | ...............ca.. | 25 | 89 |
| HQ891929.1 | Human enterovirus 71 strain Shanghai 118-2009, complete genome | 7 | ...............ca.. | 25 | 89 |
| HQ400942.1 | Human enterovirus 71 HZ08/Hangzhou/2008, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ423142.1 | Human enterovirus 71 strain KMM/09, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ423143.1 | Human enterovirus 71 strain KM186/09, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ456305.1 | Human enterovirus A strain GZ2010-156, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ456306.1 | Human enterovirus A strain GZ2010-134, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ456307.1 | Human enterovirus A strain GZ2010-120, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ456308.1 | Human enterovirus A strain GZ2010-118, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ456309.1 | Human enterovirus A strain GZ08-831, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ456311.1 | Human enterovirus A strain GZ08-522, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ456312.1 | Human enterovirus A strain GZ08-520, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ456313.1 | Human enterovirus A strain GZ2010-95, complete genome | 6 | ...............ca.. | 24 | 89 |
| HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 6 | ...............ca.. | 24 | 89 |
| JN001860.1 | Human enterovirus 71 strain NB/2010/01, complete genome | 6 | ...............ca.. | 24 | 89 |
| EU812514.1 | Human coxsackievirus A16 strain FY18 from China, complete genome | 6 | ...............____ | 20 | 78 |
| HM031191.1 | Human echovirus 25 strain HN-2, complete genome | 8 | _...g..........t... | 25 | 84 |
| DQ358078.1 | Human coxsackievirus A20 serotype CAV20a, complete genome | 4247 | __..........a....._ | 4232 | 78 |
| HM185055.1 | Human echovirus 6 strain Echo6/Henan/116/2008, complete genome | 10 | ___............t... | 25 | 78 |
| GQ994988.1 | Human enterovirus 71 strain Anhui1-09-China, complete genome | 6 | ...c...........ca.. | 24 | 84 |
| HQ325852.1 | Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome | 9 | __.............ca.. | 25 | 78 |
| D00625.1 | POL2CG1 Human poliovirus 2 genomic RNA, complete genome | 4242 | __.........aa....._ | 4227 | 73 |
| D00625.1 | POL2CG1 Human poliovirus 2 genomic RNA, complete genome | 1376 | __...a.........____ | 1364 | 63 |
| M12197.1 | POL2LAN Poliovirus type 2 (Lansing strain), complete genome | 4242 | __.........aa....._ | 4227 | 73 |
| AY238473.1 | Human poliovirus 2 strain MEF-1 polyprotein gene, complete cds | 4242 | __.........aa....._ | 4227 | 73 |
| AJ293918.1 | Human poliovirus type 3 complete genome, live-attenuated strain USOL- | 1117 | _____....t......... | 1104 | 68 |
| AY560657.1 | Human poliovirus 1 strain Brunhilde, complete genome | 1116 | _____....c......... | 1103 | 68 |
| U22522.1 | ETU22522 Human enterovirus 71 polyprotein gene, complete cds | 10 | _____..........t... | 23 | 68 |
| EU414334.1 | Human enterovirus 71 strain PLday4-CH-06, complete genome | 10 | _____..........t... | 23 | 68 |
| EU414335.1 | Human enterovirus 71 strain PLday1-CH-06, complete genome | 10 | _____..........t... | 23 | 68 |
| AJ276224.1 | Human echovirus 11 genomic RNA for polyprotein | 4587 | .........t.t...____ | 4573 | 68 |
| AY556070.1 | Enterovirus 75 strain USA/OK85-10362, complete genome | 12 | ____...........t.a. | 26 | 68 |
| AY556070.1 | Enterovirus 75 strain USA/OK85-10362, complete genome | 1116 | ______.........g... | 1104 | 63 |
| AY896765.1 | Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g | 4560 | .........t.t...____ | 4546 | 68 |
| AF499637.1 | Human coxsackievirus A13 strain Flores, complete genome | 1115 | _____.g..........._ | 1103 | 63 |
| AF499640.1 | Human coxsackievirus A18 strain G13, complete genome | 1114 | _____.g..........._ | 1102 | 63 |
| AF465511.1 | Human coxsackievirus A13 strain Flores, complete genome | 1115 | _____.g..........._ | 1103 | 63 |
| EF555645.1 | Human enterovirus 102, complete genome | 1115 | _____..........g.._ | 1103 | 63 |
| AY302555.1 | Human echovirus 32 strain PR-10 complete genome | 1 | ______.........t... | 13 | 63 |
| AF316321.2 | Enterovirus 5865/sin/000009, complete genome | 3151 | _____.........c..._ | 3163 | 63 |
| AB575915.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 944 | 5738 | ____...........g.__ | 5726 | 63 |